HL_8FON_102

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8FON|1|RA|G|2751, 8FON|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_102 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1477

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8FON|1|RA|C|2745
8FON|1|RA|U|2746
8FON|1|RA|G|2747
8FON|1|RA|A|2748
8FON|1|RA|A|2749
8FON|1|RA|A|2750
8FON|1|RA|G|2751
8FON|1|RA|C|2752
8FON|1|RA|A|2753
8FON|1|RA|U|2754
8FON|1|RA|C|2755
8FON|1|RA|U|2756
8FON|1|RA|A|2757
8FON|1|RA|A|2758
8FON|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13