HL_8FRU_004

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGCGC

Length

5 nucleotides

Bulged bases

8FRU|1|1|G|119, 8FRU|1|1|G|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_004 not in the Motif Atlas

Geometric match to HL_5J7L_204

Geometric discrepancy: 0.1437

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8FRU|1|1|G|118
8FRU|1|1|G|119
8FRU|1|1|C|120
8FRU|1|1|G|121
8FRU|1|1|C|122

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 4

5.8S rRNA

Chain G

60S ribosomal protein eL8

Chain N

60S ribosomal protein eL15