HL_8FRU_006

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

8FRU|1|1|G|175, 8FRU|1|1|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1448

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8FRU|1|1|C|173
8FRU|1|1|C|174
8FRU|1|1|G|175
8FRU|1|1|A|176
8FRU|1|1|G|177

Current chains

Chain 1

28S rRNA

Nearby chains

Chain C

60S ribosomal protein uL4

Chain Y

60S ribosomal protein uL24