HL_8FRU_007
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GUGCAAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8FRU|1|1|G|183, 8FRU|1|1|C|184, 8FRU|1|1|A|185
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FRU_007 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.13
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8FRU|1|1|G|181
8FRU|1|1|U|182
8FRU|1|1|G|183
8FRU|1|1|C|184
8FRU|1|1|A|185
8FRU|1|1|A|186
8FRU|1|1|G|187
8FRU|1|1|C|188
8FRU|1|1|C|189
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S rRNA
- Chain C
- 60S ribosomal protein uL4
- Chain Y
- 60S ribosomal protein uL24
- Chain e
- 60S ribosomal protein eL32
Coloring options: