HL_8FRU_013

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UCUCGAAACA

Length

10 nucleotides

Bulged bases

8FRU|1|1|C|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_013 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.1032

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8FRU|1|1|U|386
8FRU|1|1|C|387
8FRU|1|1|U|388
8FRU|1|1|C|389
8FRU|1|1|G|390
8FRU|1|1|A|391
8FRU|1|1|A|392
8FRU|1|1|A|393
8FRU|1|1|C|394
8FRU|1|1|A|395

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain a

60S ribosomal protein uL15

Chain e

60S ribosomal protein eL32