HL_8FRU_016

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGCCCCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_016 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.2802

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8FRU|1|1|C|460
8FRU|1|1|G|461
8FRU|1|1|C|462
8FRU|1|1|C|463
8FRU|1|1|C|464
8FRU|1|1|C|465
8FRU|1|1|G|466
8FRU|1|1|G|467

Current chains

Chain 1

28S rRNA

Nearby chains

Chain Q

60S ribosomal protein eL18

Chain b

60S ribosomal protein eL29