HL_8FRU_026

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCGCGC

Length

6 nucleotides

Bulged bases

8FRU|1|1|G|1043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_026 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1012

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

8FRU|1|1|G|1041
8FRU|1|1|C|1042
8FRU|1|1|G|1043
8FRU|1|1|C|1044
8FRU|1|1|G|1045
8FRU|1|1|C|1046

Current chains

Chain 1

28S rRNA

Nearby chains

Chain C

60S ribosomal protein uL4

Chain F

60S ribosomal protein uL30

Chain Q

60S ribosomal protein eL18