HL_8FRU_029

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUGCAUCUG

Length

9 nucleotides

Bulged bases

8FRU|1|1|G|1189, 8FRU|1|1|C|1193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_029 not in the Motif Atlas

Geometric match to HL_7A0S_041

Geometric discrepancy: 0.337

The information below is about HL_7A0S_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8FRU|1|1|C|1187
8FRU|1|1|U|1188
8FRU|1|1|G|1189
8FRU|1|1|C|1190
8FRU|1|1|A|1191
8FRU|1|1|U|1192
8FRU|1|1|C|1193
8FRU|1|1|U|1194
8FRU|1|1|G|1195

Current chains

Chain 1

28S rRNA

Nearby chains

Chain P

60S ribosomal protein uL22

Chain R

60S ribosomal protein eL19

Chain l

60S ribosomal protein eL39