HL_8FRU_039

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8FRU|1|1|U|1555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_039 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0791

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8FRU|1|1|C|1553
8FRU|1|1|C|1554
8FRU|1|1|U|1555
8FRU|1|1|C|1556
8FRU|1|1|G|1557
8FRU|1|1|G|1558

Current chains

Chain 1

28S rRNA

Nearby chains

Chain n

60S ribosomal protein eL41

Chain p

60S ribosomal protein eL43