HL_8FRU_045

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8FRU|1|1|A|1742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_045 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.0907

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8FRU|1|1|G|1739
8FRU|1|1|U|1740
8FRU|1|1|A|1741
8FRU|1|1|A|1742
8FRU|1|1|C|1743
8FRU|1|1|U|1744
8FRU|1|1|A|1745
8FRU|1|1|U|1746
8FRU|1|1|G|1747
8FRU|1|1|A|1748
8FRU|1|1|C|1749

Current chains

Chain 1

28S rRNA

Nearby chains