HL_8FRU_052

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GACGGAGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_052 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2925

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8FRU|1|1|G|2095
8FRU|1|1|A|2096
8FRU|1|1|C|2097
8FRU|1|1|G|2098
8FRU|1|1|G|2099
8FRU|1|1|A|2100
8FRU|1|1|G|2101
8FRU|1|1|A|2102
8FRU|1|1|C|2103

Current chains

Chain 1

28S rRNA

Nearby chains

Chain J

60S ribosomal protein uL5