HL_8FRU_056
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCGGCCGCG
- Length
- 9 nucleotides
- Bulged bases
- 8FRU|1|1|C|2198
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FRU_056 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.1408
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8FRU|1|1|C|2197
8FRU|1|1|C|2198
8FRU|1|1|G|2199
8FRU|1|1|G|2200
8FRU|1|1|C|2201
8FRU|1|1|C|2202
8FRU|1|1|G|2203
8FRU|1|1|C|2204
8FRU|1|1|G|2205
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein eL13
- Chain a
- 60S ribosomal protein uL15
- Chain i
- 60S ribosomal protein eL36
- Chain o
- 60S ribosomal protein eL42
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