HL_8FRU_073
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- AACUCGUUCCGAAUU
- Length
- 15 nucleotides
- Bulged bases
- 8FRU|1|3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FRU_073 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1899
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8FRU|1|3|A|31
8FRU|1|3|A|32
8FRU|1|3|C|33
8FRU|1|3|U|34
8FRU|1|3|C|35
8FRU|1|3|G|36
8FRU|1|3|U|37
8FRU|1|3|U|38
8FRU|1|3|C|39
8FRU|1|3|C|40
8FRU|1|3|G|41
8FRU|1|3|A|42
8FRU|1|3|A|43
8FRU|1|3|U|44
8FRU|1|3|U|45
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S ribosomal protein uL18
- Chain J
- 60S ribosomal protein uL5
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