HL_8FTO_077

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

8FTO|1|a|A|1780, 8FTO|1|a|U|1781, 8FTO|1|a|U|1782, 8FTO|1|a|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FTO_077 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0468

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8FTO|1|a|U|1777
8FTO|1|a|U|1778
8FTO|1|a|U|1779
8FTO|1|a|A|1780
8FTO|1|a|U|1781
8FTO|1|a|U|1782
8FTO|1|a|A|1783
8FTO|1|a|A|1784
8FTO|1|a|A|1785
8FTO|1|a|A|1786
8FTO|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2