HL_8FZD_012

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8FZD|1|A|G|386, 8FZD|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZD_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1252

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8FZD|1|A|A|382
8FZD|1|A|C|383
8FZD|1|A|A|384
8FZD|1|A|C|385
8FZD|1|A|G|386
8FZD|1|A|U|387
8FZD|1|A|G|388
8FZD|1|A|G|389
8FZD|1|A|U|390
8FZD|1|A|A|391
8FZD|1|A|U|392

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28

Chain y

Transfer RNA; tRNA