HL_8FZG_012

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8FZG|1|A|G|386, 8FZG|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZG_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1303

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8FZG|1|A|A|382
8FZG|1|A|C|383
8FZG|1|A|A|384
8FZG|1|A|C|385
8FZG|1|A|G|386
8FZG|1|A|U|387
8FZG|1|A|G|388
8FZG|1|A|G|389
8FZG|1|A|U|390
8FZG|1|A|A|391
8FZG|1|A|U|392

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28

Chain y

Transfer RNA; tRNA