HL_8FZI_012

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8FZI|1|A|G|386, 8FZI|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZI_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1135

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8FZI|1|A|A|382
8FZI|1|A|C|383
8FZI|1|A|A|384
8FZI|1|A|C|385
8FZI|1|A|G|386
8FZI|1|A|U|387
8FZI|1|A|G|388
8FZI|1|A|G|389
8FZI|1|A|U|390
8FZI|1|A|A|391
8FZI|1|A|U|392

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28

Chain x

Transfer RNA; tRNA