HL_8FZI_022
3D structure
- PDB id
- 8FZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- U(1MG)(PSU)(5MU)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 8FZI|1|A|A|751, 8FZI|1|A|A|752
- QA status
- Modified nucleotides: 1MG, PSU, 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FZI_022 not in the Motif Atlas
- Homologous match to HL_5J7L_155
- Geometric discrepancy: 0.0864
- The information below is about HL_5J7L_155
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8FZI|1|A|U|744
8FZI|1|A|1MG|745
8FZI|1|A|PSU|746
8FZI|1|A|5MU|747
8FZI|1|A|G|748
8FZI|1|A|A|749
8FZI|1|A|A|750
8FZI|1|A|A|751
8FZI|1|A|A|752
8FZI|1|A|A|753
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain 6
- 50S ribosomal protein L34
- Chain D
- 50S ribosomal protein L3
- Chain U
- 50S ribosomal protein L22
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