3D structure

PDB id
8FZI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZI_085 not in the Motif Atlas
Homologous match to HL_4LFB_015
Geometric discrepancy: 0.1287
The information below is about HL_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_38491.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8FZI|1|a|C|689
8FZI|1|a|G|690
8FZI|1|a|G|691
8FZI|1|a|U|692
8FZI|1|a|G|693
8FZI|1|a|A|694
8FZI|1|a|A|695
8FZI|1|a|A|696
8FZI|1|a|U|697
8FZI|1|a|G|698

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain g
30S ribosomal protein S7
Chain k
30S ribosomal protein S11
Chain u
30S ribosomal protein S21
Chain z
F-UAA mRNA

Coloring options:


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