HL_8FZJ_012

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8FZJ|1|A|G|386, 8FZJ|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZJ_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0947

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8FZJ|1|A|A|382
8FZJ|1|A|C|383
8FZJ|1|A|A|384
8FZJ|1|A|C|385
8FZJ|1|A|G|386
8FZJ|1|A|U|387
8FZJ|1|A|G|388
8FZJ|1|A|G|389
8FZJ|1|A|U|390
8FZJ|1|A|A|391
8FZJ|1|A|U|392

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28

Chain x

Transfer RNA; tRNA