HL_8G2U_028

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8G2U|1|B|U|958, 8G2U|1|B|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G2U_028 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0913

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8G2U|1|B|U|955
8G2U|1|B|G|956
8G2U|1|B|C|957
8G2U|1|B|U|958
8G2U|1|B|A|959
8G2U|1|B|A|960
8G2U|1|B|C|961
8G2U|1|B|G|962

Current chains

Chain B

23S rRNA

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16