HL_8G31_018

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

8G31|1|B|C|544, 8G31|1|B|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G31_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3788

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8G31|1|B|G|543
8G31|1|B|C|544
8G31|1|B|U|545
8G31|1|B|U|546
8G31|1|B|A|547
8G31|1|B|G|548
8G31|1|B|G|549
8G31|1|B|C|550

Current chains

Chain B

23S

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

Ribosomal protein L21