HL_8G31_030

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

8G31|1|B|U|1065, 8G31|1|B|U|1066, 8G31|1|B|A|1067, 8G31|1|B|G|1068, 8G31|1|B|A|1070, 8G31|1|B|G|1071, 8G31|1|B|C|1072, 8G31|1|B|G|1074

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G31_030 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3298

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8G31|1|B|G|1063
8G31|1|B|C|1064
8G31|1|B|U|1065
8G31|1|B|U|1066
8G31|1|B|A|1067
8G31|1|B|G|1068
8G31|1|B|A|1069
8G31|1|B|A|1070
8G31|1|B|G|1071
8G31|1|B|C|1072
8G31|1|B|A|1073
8G31|1|B|G|1074
8G31|1|B|C|1075

Current chains

Chain B

23S

Nearby chains

Chain 6

GTPase HflX