HL_8G31_050

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8G31|1|B|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G31_050 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.3649

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8G31|1|B|G|1910
8G31|1|B|U|1911
8G31|1|B|A|1912
8G31|1|B|A|1913
8G31|1|B|C|1914
8G31|1|B|U|1915
8G31|1|B|A|1916
8G31|1|B|U|1917
8G31|1|B|A|1918
8G31|1|B|A|1919
8G31|1|B|C|1920

Current chains

Chain B

23S

Nearby chains

Chain 6

GTPase HflX

Chain v

Small subunit ribosomal RNA; SSU rRNA