HL_8G31_056

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8G31|1|B|A|2268, 8G31|1|B|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G31_056 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1349

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8G31|1|B|C|2264
8G31|1|B|U|2265
8G31|1|B|A|2266
8G31|1|B|A|2267
8G31|1|B|A|2268
8G31|1|B|G|2269
8G31|1|B|A|2270
8G31|1|B|G|2271
8G31|1|B|U|2272
8G31|1|B|A|2273
8G31|1|B|A|2274
8G31|1|B|C|2275
8G31|1|B|G|2276

Current chains

Chain B

23S

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27