HL_8G31_068

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8G31|1|B|G|2751, 8G31|1|B|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G31_068 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1082

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8G31|1|B|C|2745
8G31|1|B|U|2746
8G31|1|B|G|2747
8G31|1|B|A|2748
8G31|1|B|A|2749
8G31|1|B|A|2750
8G31|1|B|G|2751
8G31|1|B|C|2752
8G31|1|B|A|2753
8G31|1|B|U|2754
8G31|1|B|C|2755
8G31|1|B|U|2756
8G31|1|B|A|2757
8G31|1|B|A|2758
8G31|1|B|G|2759

Current chains

Chain B

23S

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13