3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G31_086 not in the Motif Atlas
Homologous match to HL_5J7L_015
Geometric discrepancy: 0.1102
The information below is about HL_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8G31|1|v|C|689
8G31|1|v|G|690
8G31|1|v|G|691
8G31|1|v|U|692
8G31|1|v|G|693
8G31|1|v|A|694
8G31|1|v|A|695
8G31|1|v|A|696
8G31|1|v|U|697
8G31|1|v|G|698

Current chains

Chain v
16S

Nearby chains

Chain B
Large subunit ribosomal RNA; LSU rRNA
Chain f
30S ribosomal protein S7
Chain j
30S ribosomal protein S11
Chain t
30S ribosomal protein S21 (Fragment)

Coloring options:


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