HL_8G4S_005

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGUCGCGGC

Length

9 nucleotides

Bulged bases

8G4S|1|2|G|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_005 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1637

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8G4S|1|2|G|242
8G4S|1|2|G|243
8G4S|1|2|U|244
8G4S|1|2|C|245
8G4S|1|2|G|246
8G4S|1|2|C|247
8G4S|1|2|G|248
8G4S|1|2|G|249
8G4S|1|2|C|250

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

SSU ribosomal protein S17P