HL_8G4S_007

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CCUGCGAGACGG

Length

12 nucleotides

Bulged bases

8G4S|1|2|G|312, 8G4S|1|2|C|314, 8G4S|1|2|G|315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_007 not in the Motif Atlas

Homologous match to HL_8C3A_201

Geometric discrepancy: 0.1267

The information below is about HL_8C3A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8G4S|1|2|C|305
8G4S|1|2|C|306
8G4S|1|2|U|307
8G4S|1|2|G|308
8G4S|1|2|C|309
8G4S|1|2|G|310
8G4S|1|2|A|311
8G4S|1|2|G|312
8G4S|1|2|A|313
8G4S|1|2|C|314
8G4S|1|2|G|315
8G4S|1|2|G|316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8