HL_8G4S_022
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- GACCCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 8G4S|1|2|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G4S_022 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.16
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8G4S|1|2|G|929
8G4S|1|2|A|930
8G4S|1|2|C|931
8G4S|1|2|C|932
8G4S|1|2|C|933
8G4S|1|2|A|934
8G4S|1|2|A|935
8G4S|1|2|C|936
8G4S|1|2|G|937
8G4S|1|2|C|938
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Q
- Ribosomal protein S16
- Chain U
- Ribosomal protein S20
- Chain d
- Ribosomal protein S29A
- Chain h
- Transfer RNA; tRNA
- Chain i
- Transfer RNA; tRNA
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