HL_8G4S_023

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CCGGGCGCG

Length

9 nucleotides

Bulged bases

8G4S|1|2|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_023 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.319

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8G4S|1|2|C|978
8G4S|1|2|C|979
8G4S|1|2|G|980
8G4S|1|2|G|981
8G4S|1|2|G|982
8G4S|1|2|C|983
8G4S|1|2|G|984
8G4S|1|2|C|985
8G4S|1|2|G|986

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

Ribosomal protein S15

Chain d

Ribosomal protein S29A

Chain f

Ribosomal protein S27a