HL_8G5Y_091

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8G5Y|1|S2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Y_091 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.175

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8G5Y|1|S2|G|288
8G5Y|1|S2|G|289
8G5Y|1|S2|U|290
8G5Y|1|S2|G|291
8G5Y|1|S2|A|292
8G5Y|1|S2|C|293
8G5Y|1|S2|U|294
8G5Y|1|S2|C|295

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11