HL_8G5Z_116

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

8G5Z|1|S2|U|1371

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Z_116 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.3217

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8G5Z|1|S2|G|1366
8G5Z|1|S2|PSU|1367
8G5Z|1|S2|U|1368
8G5Z|1|S2|A|1369
8G5Z|1|S2|A|1370
8G5Z|1|S2|U|1371
8G5Z|1|S2|U|1372
8G5Z|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17