HL_8G60_024

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8G60|1|L5|U|1596, 8G60|1|L5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_024 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0716

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8G60|1|L5|A|1593
8G60|1|L5|C|1594
8G60|1|L5|G|1595
8G60|1|L5|U|1596
8G60|1|L5|G|1597
8G60|1|L5|C|1598
8G60|1|L5|A|1599
8G60|1|L5|A|1600
8G60|1|L5|A|1601
8G60|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

uL3

Chain LP

uL22

Chain Lj

eL37