HL_8G60_052

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

G(PSU)UUAAUUAAAAC

Length

13 nucleotides

Bulged bases

8G60|1|L5|A|3642, 8G60|1|L5|A|3643, 8G60|1|L5|U|3644, 8G60|1|L5|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_052 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.2984

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8G60|1|L5|G|3638
8G60|1|L5|PSU|3639
8G60|1|L5|U|3640
8G60|1|L5|U|3641
8G60|1|L5|A|3642
8G60|1|L5|A|3643
8G60|1|L5|U|3644
8G60|1|L5|U|3645
8G60|1|L5|A|3646
8G60|1|L5|A|3647
8G60|1|L5|A|3648
8G60|1|L5|A|3649
8G60|1|L5|C|3650

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

uL2

Chain Lj

eL37