HL_8G60_111

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8G60|1|S2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_111 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2535

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8G60|1|S2|A|1295
8G60|1|S2|U|1296
8G60|1|S2|U|1297
8G60|1|S2|G|1298
8G60|1|S2|A|1299
8G60|1|S2|U|1300
8G60|1|S2|A|1301
8G60|1|S2|G|1302
8G60|1|S2|C|1303
8G60|1|S2|U|1304

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

uS19

Chain Sd

uS14

Chain Sf

eS31