HL_8G61_001
3D structure
- PDB id
- 8G61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.94 Å
Loop
- Sequence
- CUCAG(H2U)CGG(H2U)AGAG
- Length
- 14 nucleotides
- Bulged bases
- 8G61|1|At|C|17, 8G61|1|At|G|18, 8G61|1|At|G|19, 8G61|1|At|A|21
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G61_001 not in the Motif Atlas
- Homologous match to HL_4V9I_038
- Geometric discrepancy: 0.458
- The information below is about HL_4V9I_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68572.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8G61|1|At|C|11
8G61|1|At|U|12
8G61|1|At|C|13
8G61|1|At|A|14
8G61|1|At|G|15
8G61|1|At|H2U|16
8G61|1|At|C|17
8G61|1|At|G|18
8G61|1|At|G|19
8G61|1|At|H2U|20
8G61|1|At|A|21
8G61|1|At|G|22
8G61|1|At|A|23
8G61|1|At|G|24
Current chains
- Chain At
- A-site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Pt
- Transfer RNA; tRNA
Coloring options: