HL_8G61_014

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_014 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.349

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8G61|1|L5|U|392
8G61|1|L5|U|393
8G61|1|L5|G|394
8G61|1|L5|A|395
8G61|1|L5|A|396
8G61|1|L5|G|397
8G61|1|L5|A2M|398
8G61|1|L5|G|399

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17