HL_8G61_019

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

C(OMG)UCUUG(1MA)AAC(A2M)CG

Length

14 nucleotides

Bulged bases

8G61|1|L5|C|1325

QA status

Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_019 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1421

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8G61|1|L5|C|1315
8G61|1|L5|OMG|1316
8G61|1|L5|U|1317
8G61|1|L5|C|1318
8G61|1|L5|U|1319
8G61|1|L5|U|1320
8G61|1|L5|G|1321
8G61|1|L5|1MA|1322
8G61|1|L5|A|1323
8G61|1|L5|A|1324
8G61|1|L5|C|1325
8G61|1|L5|A2M|1326
8G61|1|L5|C|1327
8G61|1|L5|G|1328

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32