HL_8G61_029

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GAAAC

Length

5 nucleotides

Bulged bases

8G61|1|L5|A|1767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_029 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3549

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8G61|1|L5|G|1764
8G61|1|L5|A|1765
8G61|1|L5|A|1766
8G61|1|L5|A|1767
8G61|1|L5|C|1768

Current chains

Chain L5

28S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18