HL_8G61_033

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8G61|1|L5|G|1981, 8G61|1|L5|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_033 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.4777

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8G61|1|L5|C|1978
8G61|1|L5|A|1979
8G61|1|L5|U|1980
8G61|1|L5|G|1981
8G61|1|L5|G|1982
8G61|1|L5|A|1983
8G61|1|L5|A|1984
8G61|1|L5|G|1985
8G61|1|L5|U|1986
8G61|1|L5|C|1987
8G61|1|L5|G|1988

Current chains

Chain L5

28S rRNA

Nearby chains