HL_8G61_086
3D structure
- PDB id
- 8G61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.94 Å
Loop
- Sequence
- CAGCCCGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 8G61|1|Pt|C|16, 8G61|1|Pt|C|17, 8G61|1|Pt|C|18, 8G61|1|Pt|G|19, 8G61|1|Pt|G|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G61_086 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.1241
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8G61|1|Pt|C|13
8G61|1|Pt|A|14
8G61|1|Pt|G|15
8G61|1|Pt|C|16
8G61|1|Pt|C|17
8G61|1|Pt|C|18
8G61|1|Pt|G|19
8G61|1|Pt|G|20
8G61|1|Pt|H2U|21
8G61|1|Pt|A|22
8G61|1|Pt|G|23
Current chains
- Chain Pt
- RNA (77-MER)
Nearby chains
- Chain 5A
- eIF5A1
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
- Chain Lo
- 60S ribosomal protein L36a
- Chain Lz
- 60S ribosomal protein L10a
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