HL_8G61_092

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_092 not in the Motif Atlas

Geometric match to HL_9DE7_001

Geometric discrepancy: 0.3932

The information below is about HL_9DE7_001

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA

Motif group

HL_87306.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8G61|1|S2|C|196
8G61|1|S2|U|197
8G61|1|S2|U|198
8G61|1|S2|C|199
8G61|1|S2|G|200
8G61|1|S2|C|201
8G61|1|S2|G|202
8G61|1|S2|G|203

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8