3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
8G61|1|S2|G|451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G61_097 not in the Motif Atlas
Homologous match to HL_4V88_195
Geometric discrepancy: 0.091
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8G61|1|S2|C|441
8G61|1|S2|C|442
8G61|1|S2|U|443
8G61|1|S2|G|444
8G61|1|S2|A|445
8G61|1|S2|G|446
8G61|1|S2|A|447
8G61|1|S2|A|448
8G61|1|S2|A|449
8G61|1|S2|C|450
8G61|1|S2|G|451
8G61|1|S2|G|452

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SG
40S ribosomal protein S6
Chain SI
40S ribosomal protein S8
Chain SY
40S ribosomal protein S24

Coloring options:


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