HL_8G61_100

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

8G61|1|S2|U|541, 8G61|1|S2|U|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_100 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.5927

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8G61|1|S2|C|539
8G61|1|S2|U|540
8G61|1|S2|U|541
8G61|1|S2|U|542
8G61|1|S2|C|543
8G61|1|S2|G|544

Current chains

Chain S2

18S rRNA

Nearby chains