HL_8G61_118

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_118 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.3463

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8G61|1|S2|C|1565
8G61|1|S2|G|1566
8G61|1|S2|G|1567
8G61|1|S2|C|1568
8G61|1|S2|A|1569
8G61|1|S2|G|1570

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19