3D structure

PDB id
8G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUUGGGAAUG
Length
10 nucleotides
Bulged bases
8G6J|1|L5|A|295, 8G6J|1|L5|A|296
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6J_011 not in the Motif Atlas
Homologous match to HL_5TBW_008
Geometric discrepancy: 0.1026
The information below is about HL_5TBW_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

8G6J|1|L5|C|289
8G6J|1|L5|U|290
8G6J|1|L5|U|291
8G6J|1|L5|G|292
8G6J|1|L5|G|293
8G6J|1|L5|G|294
8G6J|1|L5|A|295
8G6J|1|L5|A|296
8G6J|1|L5|U|297
8G6J|1|L5|G|298

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
eL13
Chain LN
60S ribosomal protein L15
Chain La
60S ribosomal protein L27a
Chain Lo
60S ribosomal protein L36a

Coloring options:


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