HL_8G6W_049

3D structure

PDB id

8G6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8G6W|1|a|G|386, 8G6W|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6W_049 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0639

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8G6W|1|a|A|382
8G6W|1|a|C|383
8G6W|1|a|A|384
8G6W|1|a|C|385
8G6W|1|a|G|386
8G6W|1|a|U|387
8G6W|1|a|G|388
8G6W|1|a|G|389
8G6W|1|a|U|390
8G6W|1|a|A|391
8G6W|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28