HL_8G6Y_011

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6Y_011 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.0902

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8G6Y|1|a|U|158
8G6Y|1|a|G|159
8G6Y|1|a|A|160
8G6Y|1|a|A|161
8G6Y|1|a|U|162
8G6Y|1|a|C|163
8G6Y|1|a|C|164
8G6Y|1|a|A|165
8G6Y|1|a|U|166
8G6Y|1|a|A|167
8G6Y|1|a|G|168

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28