HL_8GHU_040

3D structure

PDB id

8GHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methyltransferase RmtC bound to the 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8GHU|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GHU_040 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.3468

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8GHU|1|a|G|259
8GHU|1|a|G|260
8GHU|1|a|U|261
8GHU|1|a|A|262
8GHU|1|a|A|263
8GHU|1|a|C|264
8GHU|1|a|G|265
8GHU|1|a|G|266
8GHU|1|a|C|267

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20